Dr. Bhupesh Goyal

Assistant Professor

Specialization

Protein folding and misfolding, molecular modeling

Email

bhupesh@thapar.edu

Specialization

Protein folding and misfolding, molecular modeling

Email

bhupesh@thapar.edu

                    Bhupesh Goyal, Ph.D.

Assistant Professor-III, School of Chemistry and Biochemistry

Thapar Institute of Engineering & Technology (Deemed to be University)

Patiala–147004, Punjab, India

Email: bhupesh@iitbombay.org, bhupesh@thapar.edu; Mobile: 9988110514

EDUCATION

Degree

Institute/University

Year

Result

Ph.D. (Computational and Bioorganic Chemistry)

Department of Chemistry, IIT Bombay, Mumbai

2012

CPI 9.33

M.Sc. (Honours School) Chemistry

Department of Chemistry, Panjab University, Chandigarh

2006

73.7%

B.Sc. (Honours School) Chemistry

Department of Chemistry,  Panjab University, Chandigarh

2004

72.1%

TEACHING AND RESEARCH EXPERIENCE

Name of the Institution

Position

From

To

Courses taught/ Research work

Thapar Institute of Engineering & Technology, Patiala, Punjab

Assistant Professor, School of Chemistry & Biochemistry

2017

Continuing

Chemical Biology, Stereochemistry and Photochemistry, Synthetic and Natural Polymers, Organic Reaction Mechanisms, Organic Chemistry, Applied Chemistry, Electrochemistry and Thermodynamics, Applied Chemistry Lab

Sri Guru Granth Sahib World University

Fatehgarh Sahib, Punjab

Assistant Professor, Department  of Chemistry

2013

2017

Topics in Chemistry, Organic Reaction Mechanism & Stereochemistry, Organic Reactions & Rearrangements, Bioorganic Chemistry, Biochemistry, Applied Chemistry, Physical Chemistry lab, Applied Chemistry Lab

Central University of Punjab, Bathinda, Punjab

Assistant Professor (contractual), Centre for Computational Sciences

2013

2013

Contributed in the drafting of syllabus for M.Sc. in Computational Sciences

Arizona State University, Tempe, USA

Postdoctoral Scholar, Department of Chemistry & Biochemistry

2012

2013

Synthesis and characterization of membrane soluble peptides to study protein protein interactions in the membrane

Indian Institute of Technology Bombay, Mumbai

Teaching Assistant, Department of Chemistry

2008

2009

B. Tech. Theory Course (CH-102 T) (Organic) &  B. Tech. Laboratory Course (CH-117 L)

Ranbaxy Research Laboratories, Gurgaon

Trainee Chemist, Medicinal Chemistry Department

2006

2007

Design and synthesis of biologically active small molecules using parallel synthesis

RESEARCH PROJECTS SUBMITTED/RECEIVED IN THE PAST AND/ONGOING PROJECTS

  • Research proposal of Rs. 49,49,088/- on the topic “Development of multifunctional peptides for targeting metal-mediated α-synuclein aggregation in Parkinson’s disease” submitted as PI under the Investigator-Initiated Research Proposals scheme by Indian Council of Medical Research in April 2023.
  • Research proposal of Rs. 71,04,240/- on the topic “Peptide-metal chelator conjugates as potential therapeutic candidates for multifaceted amyloid-β toxicity in Alzheimer’s disease” submitted as Co–PI under the Core Research Grant (CRG) scheme by SERB-DST in February 2023.
  • Awarded a research proposal of Rs. 35,58,280/- on the topicCombined computational and biophysical approaches to evaluate new multifunctional modulators of amylin/Cu2+–mediated amylin aggregationunder the CRG scheme by SERB-DST in February 2023.
  • Awarded a research proposal of Rs. 14,93,000/- on the topic “Integrating in silico and in vitro approaches to design and develop novel peptides as potential inhibitors against human islet amyloid polypeptide fibrillation in type 2 diabetes” under the CSIR research grant scheme during 2021 –2024.
  • Awarded a research proposal of Rs. 14,30,000/- on the topic Computational scrutiny of the mechanism of amyloid-β peptide aggregation” under the start-up research grant scheme by SERB-DST during 2014–2017.

AWARDS AND RECOGNITIONS

S. No.

Name of Award

Awarding Agency

Year

1.

Selected for the best poster award on the topic “Identification of potential inhibitors against β2m aggregation in Dialysis-related amyloidosis by computational screening and molecular dynamics simulations” at 88th Annual Meeting of the Society of Biological Chemists, India (SBCI-2019) and conference on Advances at the Interface of Biology & Chemistry at BARC, Mumbai, Nov. 1- 3, 2019

Society of Biological Chemists (SBCI), India

2019

2.

Recognised by Royal Society of Chemistry editors as an Outstanding Reviewer for RSC Advances in 2018

Royal Society of Chemistry, UK

2018

3.

Nominated by Indian Science Congress Association (ISCA), Patiala-Chapter for a poster presentation on the topic entitled “Present scenario and recent developments in Alzheimer’s disease research” in the “Science Communicators Meet (9th Rastriya Vigyan Sancharak Sammelan) during 103rd Session of the Indian Science Congress” at University of Mysore, Mysuru, Jan 3–7, 2016

Indian Science Congress Association (ISCA), Patiala-Chapter

2016

4.

Invited Lecture on the topic “Understanding the role of molecular dynamics simulations in computer-aided drug design” during the 46th workshop entitled “Application of Molecular Dynamics Simulation in Molecular Modelling & Drug Designing”, at Biotech Park in Biotechnology City, Lucknow, promoted by Department of Biotechnology, Govt. of India and Department of Science & Technology, Govt. of U.P. during Feb 26–28, 2015

Biotech Park in Biotechnology City, Lucknow, promoted by Department of Biotechnology, Govt. of India and Department of Science & Technology, Govt. of U.P.

2015

5.

Selected for Winter School on Computational Chemistry conducted by UGC-Networking Resource Centre, School of Chemistry, University of Hyderabad during Dec 29, 2014Jan 10, 2015

UGC-Networking Resource Centre, School of Chemistry, University of Hyderabad

2015

6.

Selected for the Science Academies Refresher Course on "Bioinformatics in Modern Biology" during May 5–17, 2014 at School of Life Sciences, Manipal University, Manipal.

School of Life Sciences, Manipal University, Manipal

2014

7.

Awarded Start-Up Research Grant (Young Scientists) of Rs. 14.30 lakhs on the “Computational Scrutiny of the Mechanism of Amyloid β-Peptide Aggregation by Science and Engineering Research Board (SERB), Govt. of India in March, 2014

Science and Engineering Research Board (SERB), Govt. of India

2014

8.

Awarded postdoctoral research fellowship at the Center for Bio-inspired Solar Fuel Production, an Energy Frontier Research Center sponsored by the U.S. Department of Energy, at Department of Chemistry & Biochemistry, Arizona State University, Tempe, USA during 2012-2013

U.S. Department of Energy, at Department of Chemistry & Biochemistry, Arizona State University, Tempe, USA

2012

9.

Awarded Foreign Travel Grant for a poster presentation in 242nd American Chemical Society National Meeting & Exposition, Denver, Colorado, USA during Aug. 28–Sept. 01, 2011

DST, New Delhi, CSIR, New Delhi &

DBT, New Delhi

2011

10.

Awarded senior research fellowship by Council of Scientific & Industrial Research (CSIR), New Delhi in 2009 at Department of Chemistry, IIT Bombay, Mumbai. 

CSIR-UGC, New Delhi, India

2009

11.

Awarded junior research fellowship by Council of Scientific & Industrial Research (CSIR), New Delhi in 2007 at Department of Chemistry, IIT Bombay, Mumbai. 

CSIR-UGC, New Delhi, India

2007

12.

Summer visiting student-fellow of the Indian Academy of Sciences under the supervision of Prof. Y. D. Vankar, Department of Chemistry, IIT Kanpur, India. (May 2005 – July 2005)

Indian Academy of Sciences

2005

13.

Rank 1 in B.Sc. (Honours School) IIIrd year at Department of Chemistry, Panjab University, Chandigarh, India

Department of Chemistry, Panjab University, Chandigarh

2004

14.

Merit Certificate under National Scholarship Scheme in March 1998

Govt. of Punjab

1998

PEER-REVIEWED PUBLICATIONS

Total Publications: 47; Citations (Google Scholar, 23-08-2023): 1051; h-index (Google Scholar, 23-08-2023): 16

Cumulative Impact Factor: 185.8; Avg. IF/publication: 4.0

S. No.

Author(s)

Title

Name of Journal

Vol

Page

Year

Impact

factor

1.

Kaur, G.; Goyal, B.*

Insights into the interaction mechanism of boceprevir with SARS-CoV2 main protease

ChemistrySelect

8

e202301415

2023

2.1

2.

Kaur, G.; Mankoo, O.K.; Goyal, D.*; Goyal, B.*

Unveiling how hydroxytyrosol destabilizes α–Syn oligomers using molecular simulations

Journal of Physical Chemistry B

127

5620–5632

2023

3.3

3.

Mann, S.; Kaur, A.; Kaur, A.; Priyadarshi, N.; Goyal, B.*; Singhal, N. K.*; Goyal, D.*

Triazole–peptide conjugate as modulator of Aβ–aggregation, metal–mediated Aβ–aggregation and cytotoxicity

ACS Chemical Neuroscience

14

1631-1645

2023

5.0

4.

Kaur, A.; Goyal, B.*

 

Identification of new pentapeptides as potential inhibitors of amyloid–β42 aggregation using virtual screening and molecular dynamics simulations

 

Journal of Molecular Graphics and Modelling

124

108558

2023

2.9

5.

Mankoo, O. K.; Kaur, A.; Goyal, D.*; Goyal, B.*

Unravelling the destabilization potential of Ellagic acid on α-Synuclein fibrils using molecular dynamics simulations

Physical Chemistry Chemical Physics

25

8128–8143

2023

3.3

6.

Gupta, R.; Singh, V.; Sarawagi, N.; Kaur, G.; Kaur, R.; Priyadarshi, N.; Rishi, V.; Goyal, B.*; Mishra, P. P.*; Singhal, N. K.*

Salmonella typhimurium detection and ablation using OmpD specific aptamer with non-magnetic and magnetic graphene oxide

Biosensors and Bioelectronics

 

234

115354

2023

12.6

7.

Garg, P.; Priyadarshi, N.; Ambule, M.; Kaur, G.; Kaul, S.; Gupta, R.; Sagar, P.; Bajaj, G.; Yadav, B.; Rishi, V.*; Goyal, B.*; Srivastava, A. K.*; Singhal, N. K.*

Multiepitope glycan based laser assisted fluorescent nanocomposite with dual functionality for sensing and ablation of Pseudomonas aeruginosa

Nanoscale

DOI: 10.1039/D3NR02983B

2023

6.7

8.

Kaur, R.; Narang, S. S.; Singh, P.;  Goyal, B.*

Structural and molecular insights into tacrine-benzofuran hybrid induced inhibition of amyloid-β peptide aggregation and BACE1 activity

Journal of Biomolecular Structure and Dynamics

DOI: 10.1080/07391102.2023.2191722

2023

4.4

9.

Kaur, G.; Goyal, B.*

Deciphering the molecular mechanism of inhibition of β-secretase (BACE1) activity by a 2-amino-imidazol-4-one derivative

ChemistrySelect

7

e202202561

2022

2.1

10.

Singh, K.; Kaur, A.; Goyal, D.*; Goyal, B.*

Mechanistic insights into the mitigation of Aß aggregation and protofibril destabilization by a D–enantiomeric decapeptide rk10

Physical Chemistry Chemical Physics

24

21975– 21994

2022

3.3

11.

Kaur, R.; Saini, R. K.; Singh, P.;  Goyal, B.*

Unveiling the inhibitory mechanism of peptidomimetic inhibitor against Aβ42 aggregation and protofibril disaggregation by molecular dynamics

Journal of Molecular Liquids

 

335

116474

2021

6.0

12.

Garg, M.; Kumar, S., Kaur, A.; Goyal, B.; Kumar, R.*

Effect of imidazolium based ionic liquids on CO-association dynamics and thermodynamic stability of Ferrocytochrome c

Biophysical

Chemistry

 

268

106497

2021

3.8

13.

Saini, R. K.; Goyal, D.*; Goyal, B.*

Targeting human islet amyloid polypeptide aggregation and toxicity in type 2 diabetes: An overview of peptide-based inhibitors

Chemical Research in Toxicology

33

 

2719–2738

2020

4.1

14.

Shuaib, S.; Saini, R. K.; Goyal, D.; Goyal, B.*

Impact of K16A and K28A mutation on the structure and dynamics of amyloid-β42 peptide in Alzheimer's disease: Key insights from molecular dynamics simulations

Journal of Biomolecular Structure and Dynamics

38

708–721

2020

4.4

15.

Narang, S. S.; Goyal, D.; Goyal, B.*

Inhibition of Alzheimer's amyloid-β42 peptide aggregation by a bi-functional bistryptoline triazole: Key insights from molecular dynamics simulations

Journal of Biomolecular Structure and Dynamics

38

1598–1611

2020

4.4

16.

Kaur, A.; Kaur, A.; Goyal, D.*; Goyal, B.*

How does the mono-triazole derivative modulate Aβ42 aggregation and disrupt a protofibril structure: Insights from molecular dynamics simulations

ACS Omega

5

15606–15619

2020

4.1

17.

Narang, S. S.; Shuaib, S.; Goyal, D.; Goyal, B.*

In silico-guided identification of potential inhibitors against β2m aggregation in dialysis-related amyloidosis

Journal of Biomolecular Structure and Dynamics

38

3927–3941

2020

4.4

18.

Kaur, A.; Goyal, B.*

Deciphering the inhibitory mechanism of hIAPP-derived fragment peptide against hIAPP aggregation in type 2 diabetes

ChemistrySelect

5

13341–13350

2020

2.1

19.

Kaur, A.; Goyal, D.*; Goyal, B.*

An α-helix mimetic oligopyridylamide, ADH-31, modulates Aβ42 monomer aggregation and destabilizes protofibril structures: Insights from molecular dynamics simulations

Physical Chemistry Chemical Physics

 

22

28055–28073

2020

3.3

20.

Saini, R. K.; Shuaib, S.; Goyal, D.*; Goyal, B.*

Impact of mutations on the conformational transition from α-helix to β-sheet structures in Arctic-type Aβ40: Insights from molecular dynamics

ACS Omega

5

23219–23228

2020

4.1

21.

Goyal, B.*; Goyal, D.*

Targeting the dimerization of the main protease of coronaviruses: A potential broad-spectrum therapeutic strategy

ACS Combinatorial Science

22

297–305

2020

3.903

22.

Kaur, A.; Shuaib, S.; Goyal, D.*; Goyal, B.*

Interactions of a multifunctional di-triazole derivative with Alzheimer’s Aβ42 monomer and Aβ42 protofibril: a systematic molecular dynamics study.

Physical Chemistry Chemical Physics

22

1543–1556

2020

3.3

23.

Saini, R. K.; Thakur, H.; Goyal, B.*

Effect of Piedmont mutation (L34V) on the structure, dynamics, and aggregation of Alzheimer's Aβ40 peptide

Journal of Molecular Graphics and Modelling

97

107571

2020

2.9

24.

Narang, S. S.; Goyal, D.; Goyal, B.*

Molecular insights into the inhibitory mechanism of bi-functional bis-tryptoline triazole against β-secretase (BACE1) enzyme

Amino Acids

51

1593–1607

2019

3.5

25.

Kaur, A.; Narang, S. S.; Kaur, A.; Mann, S.; Priyadarshi, N.; Goyal, B.*; Singhal, N. K.*; Goyal, D.*

Multifunctional mono-triazole derivatives inhibit Aβ42 aggregation and Cu2+-mediated Aβ42 aggregation and protect against Aβ42-induced cytotoxicity

Chemical Research in Toxicology

32

1824–1839

2019

4.1

26.

Kaur, A.; Mann, S.; Kaur, A.; Priyadarshi, N.; Goyal, B.*; Singhal, N. K.*; Goyal, D.*

Multi-target-directed triazole derivatives as promising agents for the treatment of Alzheimer's disease

Bioorganic Chemistry

87

572–584

2019

5.1

27.

Shuaib, S.; Narang, S. S.; Goyal, D.; Goyal, B.*

Computational design and evaluation of β-sheet breaker peptides for destabilizing Alzheimer's amyloid-β42 protofibrils

Journal of Cellular Biochemistry

120

17935–17950

2019

4.0

28.

Saini, R. K.; Shuaib, S.; Goyal, D.; Goyal, B.*

Insights into the inhibitory mechanism of a resveratrol and clioquinol hybrid against Aβ42 aggregation and protofibril destabilization: A molecular dynamics simulation study

Journal of Biomolecular Structure and Dynamics

37

3183–3197

2019

4.4

29.

Goyal, D.*; Kaur, A.; Goyal, B.*

Benzofuran and indole: A promising scaffold for drug development in Alzheimer’s disease

ChemMedChem

13

1275–1299

2018

3.4

30.

Saini, R. K.; Shuaib, S.; Goyal, D.; Goyal, B.*

Molecular insights into the effect L17A/F19A double mutation on the structure and dynamics of Aβ40: A molecular dynamics simulation study

Journal of Cellular Biochemistry

119

8949–8961

2018

4.0

31.

Shuaib, S.; Goyal, B.*

Scrutiny of the mechanism of small molecule inhibitor preventing conformational transition of amyloid-β42 monomer: insights from molecular dynamics simulations

Journal of Biomolecular Structure and Dynamics

36

663–678

2018

4.4

32.

Narang, S. S.; Shuaib, S.; Goyal, D.; Goyal, B.*

Assessing the effect of D59P mutation in the DE loop region in amyloid aggregation propensity of β2-microglobulin: A molecular dynamics simulation study

Journal of Cellular Biochemistry

119

782–792

2017

4.0

33.

Saini, R. K.; Shuaib, S.; Goyal, B.*

Molecular insights into Aβ42 protofibril destabilization with a fluorinated compound D744: A molecular dynamics simulation study

Journal of Molecular Recognition

30

e2656

2017

2.7

34.

Shuaib, S.; Saini, R. K.; Goyal, D.;  Goyal, B.*

Insights into the inhibitory mechanism of dicyanovinyl-substituted J147 derivative against Aβ42 aggregation and protofibril destabilization: A molecular dynamics simulation study

ChemistrySelect

2

1645–1657

2017

2.1

35.

Goyal, D.*; Shuaib, S.; Mann, S.;, Goyal, B.*

Rationally designed peptides and peptidomimetics as inhibitors of amyloid-β (Aβ) aggregation: potential therapeutics of Alzheimer's disease

ACS Combinatorial Science

19

55–80

2017

3.903

36.

Narang, S. S.; Shuaib, S.; Goyal, B.*

Molecular insights into the inhibitory mechanism of rifamycin SV against β2–microglobulin aggregation: A molecular dynamics simulation study

International Journal of Biological Macromolecules

102

1025–1034

2017

8.2

37.

Srivastava, K. R.*; Goyal, B.; Kumar, A.; Durani, S.

Scrutiny of electrostatic driven conformational ordering of polypeptide chain in DMSO: A study with model oligopeptide

RSC Advances

7

27981–27991

2017

3.9

38.

Goyal, B.*; Srivastava, K. R.; Durani, S.*

N-terminal diproline and charge group effects on the stabilization of helical conformation in alanine-based short peptides: CD studies with water and methanol as solvent

Journal of Peptide Science

23

431–437

2017

2.1

39.

Goyal, B.*; Kumar, A.; Srivastava, K. R.; Durani, S.*

Scrutiny of chain-length and N-terminal effects in α-helix folding: A molecular dynamics study on polyalanine peptides

Journal of Biomolecular Structure and Dynamics

35

1923–1935

2017

4.4

40.

Goyal, B.*; Srivastava, K. R.; Durani, S.*

Examination of the effect of N‐terminal diproline and charged side chains on the stabilization of helical conformation in alanine–based short peptides: A molecular dynamics study

ChemistrySelect

1

6321–

6327

2016

2.1

41.

Goyal, B.*; Srivastava, K. Kumar, A.; R.; Patwari, G. N.; Durani, S.*

Probing the role of electrostatics of polypeptide main-chain in protein folding by perturbing N-terminal residue stereochemistry: DFT study with oligoalanine models

RSC Advances

6

113611 –

113619

2016

3.9

42.

Goyal, B.*; Kumar, A.; Srivastava, K. R.; Durani, S.*

Computational scrutiny of the effect of N-terminal proline and residue stereochemistry in the nucleation of α-helix fold

RSC Advances

6

74162–74176

2016

3.9

43.

Goyal, B.*; Srivastava, K. R.; Patel, K.; Durani, S.*

Modulation of β-hairpin peptide self-assembly: A twenty-residue poly-L β-hairpin modified rationally as a mixed-L,D hydrolase

ChemistrySelect

1

2050–2057

2016

2.1

44.

Goyal, B.*; Patel, K.; Srivastava, K. R.; Durani, S.* 

De novo design of stereochemically-bent sixteen-residue β-hairpin as a hydrolase mimic

RSC Advances

5

105400–105408

2015

3.9

45.

Shinde, S.; Binder, J.; Goyal, B.; Woodrum, B.; Munari, S. D.; Levitus, M.*; Ghirlanda, G.* 

A designed buried salt bridge modulates heterodimerization of a membrane peptide

Biopolymers

106

437–443

2014

2.592

46.

Srivastava, K. R.; Kumar, A.; Goyal, B.; Durani, S.*

Stereochemistry and solvent role in protein folding: spectroscopic and molecular dynamics studies of poly-L and alternating-L,D homopolypeptides in DMSO

The Journal of Physical Chemistry B

115

6700–6708

 

2011

3.3

47.

Patel, K.; Goyal, B.; Kumar, A.; Kishore, N.; Durani, S.*

Cured of “stickiness”, poly-L β-hairpin is promoted with LL-to-DD mutation as a protein and a hydrolase mimic

The Journal of Physical Chemistry B

114

16887–16893

 

2010

3.3

BOOK CHAPTERS

Kaur, G.; Goyal, D.*; Goyal, B.* Computational modeling of MAO inhibitors as anti-Alzheimer agents. In Computational Modeling of Drugs Against Alzheimer’s Disease Edition 2, Roy, K., Ed.; Neuromethods, Springer, 2023, 203, pp 325–353.

Goyal, D.*; Goyal, B.* Solid phase peptide synthesis. In De Novo Peptide Design: Principles and Applications, Ist ed.; Ramakrishnan, V.; Patel, K.; Goyal, R., Eds.; Elsevier, 2022, pp 57–77. 

LIST OF Ph.D. THESIS SUPERVISION

Name of Student

Year of Completion

Supervisor / Co-supervisor

Title of Thesis

Suniba Shuaib

Ph.D. awarded

(Oct. 2018)

Supervisor

Computational design of novel inhibitors against amyloid-β peptide aggregation

Present affiliation: Biotech Analyst at SGS Canada, Mississauga, Ontario, Canada

Simranjeet Singh Narang

Ph.D. awarded

(Sept. 2019)

Supervisor

In silico design of novel inhibitors against amyloidogenic fragments of human β2-microglobulin

Anupamjeet

Kaur

Ph.D. awarded

(Aug. 2022

Co-supervisor

Design, synthesis and evaluation of multitarget directed ligands in Alzheimer’s disease treatment

Rajdeep Kaur

Ph.D. awarded

(March 2023

Co-supervisor

Computational studies of inhibitors against Aβ aggregation and β-secretase (BACE1) enzyme in Alzheimer's disease

Rajneet Kaur Saini

Ph.D. awarded

(May 2023)

Co-supervisor

Molecular insight into the inhibitory mechanism of small molecules against Aβ aggregation and evaluation of novel inhibitors against Aβ aggregation in Alzheimer's disease

Apneet Kaur

Ongoing

(Jan. 2018 onwards)

Supervisor

Computational design and evaluation of novel peptide inhibitors against amyloid aggregation in type 2 diabetes mellitus and Alzheimer’s disease

Gurmeet Kaur

Ongoing

(July 2019 onwards)

Supervisor

Deciphering the inhibitory mechanism and in silico identification of potential inhibitors against BACE1 and SARS−CoV−2 Mpro enzymes

Anisha

Ongoing

(July 2019 onwards)

Supervisor

Molecular insights into the inhibitory mechanism and in silico identification of potential small molecule inhibitors of hIAPP aggregation in T2D

Tanishka

Ongoing

(July 2019 onwards)

Supervisor

Computational design and evaluation of peptide‒based antagonists of diabetes related human islet amyloid polypeptide aggregation

Ishwar Dass Thakur

Ongoing

(July 2020 onwards)

Supervisor

Integrating in silico and in vitro studies to investigate potential inhibitors of Aβ and α-synuclein aggregation

Arushi Dabas

Ongoing

(July 2020 onwards)

Supervisor

Rational design, synthesis and evaluation of destabilization potential of novel peptide inhibitors on amyloid-β fibrils

Diksha

Ongoing

(Jan. 2021 onwards)

Supervisor

In vitro and in silico investigation of peptide-based inhibitors of human islet amyloid polypeptide (hIAPP) fibrillization in type 2 diabetes

LIST OF KEY ACHIEVEMENT’S BY Ph.D. STUDENTS / AWARDS IN MENTORSHIP

  1. A research project submitted by Anupamjeet Kaur, Ph.D. student, got selected for the award of direct senior research fellowship (Direct SRF) from CSIR, New Delhi in Jan. 2020.
  2. Rajneet Kaur Saini, Ph.D. student, was selected for the travel grant (USD 750) by the Biophysical Society (BPS), USA to present her research work on the topic “How L17A/F19A double mutation diminish Aβ40 aggregation in Alzheimer’s disease: Key insights from molecular dynamics simulations in the 64th annual meeting of the BPS held at San Diego, California, USA during Feb. 15–19, 2020.
  3. Rajneet Kaur Saini, Ph.D. student, got selected for the travel grant (full airfare) by the CSIR, New Delhi to present her research work on the topic “How L17A/F19A double mutation diminish Aβ40 aggregation in Alzheimer’s disease: Key insights from molecular dynamics simulations” in the 64th annual meeting of the BPS held at San Diego, California, USA during Feb. 15–19, 2020.
  4. Gurmeet Kaur, Ph.D. student, was selected as a participant in the certificate course under RUSA 2.0 on “Practical Aspects of Quantum Chemical Calculations: Basic Concepts” held at Department of Chemistry, Kurukshetra University, Kurukshetra during December 25, 2019–January 10, 2020.
  5. Rajneet Kaur Saini was selected for the award of direct senior research fellowship (Direct SRF) from CSIR, New Delhi in 2019.
  6. Rajneet Kaur Saini was selected as a participant for the workshop on “Integrative Modeling of Macromolecular RNA structures” sponsored by Indian Academy of Sciences at Indian Institute of Science, Bengaluru, Aug 27–29, 2018.
  7. Suniba Shuaib won first prize in the oral presentation category on the topic “Computational design of novel peptide inhibitors for Aβ42 protofibril destabilization in Alzheimer's disease” at International Conference on “Translational Research in Life Sciences”, Panjab University, Chandigarh, July 5–7, 2018.
  8. Suniba Shuaib was selected for the award of direct senior research fellowship (Direct SRF) from CSIR, New Delhi in 2018.
  9. A project executive summary (PES), entitled "Computational design of novel beta-sheet breaker and cyclic peptide inhibitors against Alzheimer’s peptide: Aβ42", submitted by Suniba Shuaib has been accepted under the DST-WOS A scheme in 2015.
  10. Simranjeet Singh Narang awarded with “Maulana Azad National Fellowship (MANF)” in 2014 for a period of five years by University Grants Commission (UGC) and Ministry of Minority Affairs, Government of India, New Delhi.

PAPERS PRESENTED IN INTERNATIONAL/NATIONAL CONFERENCES

  1. Goyal, B. Workshop on First Principle Designing of Functional Molecules and Materials at Institute of Nano Science and Technology (INST) Mohali, Nov. 3 –4, 2022 (Invited lecture).
  2. Kaur, A. and Goyal, B. 3rd International Conference on Interface between Agriculture, Food, Chemical and Biological Sciences at University of Kashmir, Srinagar, India during July 27–29, 2022 (Invited lecture).
  3. Narang, S. S. and Goyal, B. 26th ISCB (Indian Society of Chemists & Biologists) International Conference (ISCBC-2020) at Nirma University, Ahmedabad, India during Jan. 22–24, 2020 (Invited lecture). 
  4. Goyal, B. International Conference on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design (ICSBCADD'2019), Department of Bioinformatics, Alagappa University, Karaikudi, Tamil Nadu, Dec. 11–13, 2019 (Oral Presentation).
  5. Narang, S. S. and Goyal, B. 88th Annual Meeting of the Society of Biological Chemists, India (SBCI-2019) and conference on Advances at the Interface of Biology & Chemistry, BARC, Mumbai, Nov. 1- 3, 2019 (Best poster award).
  6. Shuaib, S.; Saini, R. K.; Goyal, D.; Goyal, B. International conference-cum-workshop on Informatics Tools in Drug Discovery and Drug Delivery, Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, Nov. 1–4, 2018.
  7. Saini, R. K.; Shuaib, S.; Goyal, D.; Goyal, B. International Conference on Bioinformatics (InCoB), JNU, New Delhi, Sept. 26–28, 2018.
  8. Shuaib, S.; Goyal, B. International Conference on “Translational Research in Life Sciences”, PU Chandigarh, July 5–7, 2018.
  9. Shuaib, S.; Goyal, B. Intrinsically Disordered Proteins: Forms, Functions and Diseases, IISER Mohali, Dec. 9–12, 2017.
  10. Saini, R. K.; Shuaib, S.; Goyal, B. Role of Biophysics in Academia and Industry, Panjab University, Oct. 12–13, 2017.
  11. Narang, S. S.; Shuaib, S.; Goyal, D.; Goyal, B. Breaking Barriers through Bioinformatics & Computational Biology, IIT Delhi, July 31st–Aug. 1, 2017.
  12. Shuaib, S.; Saini, R. K.; Goyal, D.; Goyal, B. TC2S–2017: Sustainable Chemistry, IIT Ropar, May 15–16, 2017.
  13. Goyal, B.; Shuaib, S.; Saini, R. K.; Goyal, D. International Conference on Drug Design-2017, JNU, New Delhi, 2017.
  14. Goyal, B.; Durani, S. Third International Protein Folding Symposium, NCBS, Bengaluru, 2016.
  15. Goyal, B.; Durani, S. 6th International Symposium “CTDDR-2016” at CSIR-CDRI, Lucknow, 2016.
  16. Goyal, B.; Durani, S. Indo-US Conference on Molecular Modeling and Informatics in Drug Design, NIPER Mohali, 2014.
  17. Goyal, B.; Srivastava, K. R.; Durani, S. 3rd Indo-German Symposium on Frontiers of Chemistry, IIT Bombay, 2011.
  18. Goyal, B.; Patel, K.; Durani, S. 242nd ACS National Meeting & Exposition, Denver, Colorado, USA, 2011.
  19. Goyal, B.; Patel, K; Durani, S. Indo-US Symposium/Workshop on MTMS, IIT Bombay, 2011.
  20. Goyal, B.; Kumar, A.; Patwari, G. N.; Durani, S. Symposium on Recent Trends in Biophysics, BHU, Varanasi (IBS), 2010.
  21. Goyal, B.; Kumar, A.; Patwari, G. N.; Durani, S. Symposium on “Frontiers on Computational Biology”, C-DAC, Pune, 2009.
  22. Kumar, A.; Goyal, B.; Durani, S. RSC/IIT Bombay Symposium on the Chemical Sciences, IIT Bombay, 2009.

ADMINISTRATIVE DUTIES/ SYNERGISTIC ACTIVITIES

  • Reviewed research articles of the scientific journals of international repute such as RSC Advances, Nature Communications, ChemPhysChem, ChemBioChem, ACS Omega, ACS Chemical Neuroscience, Physical Chemistry Chemical Physics, Metallomics etc.
  • Co-ordinator (Sci-Fest 2020) held at TIET Patiala in Feb. 2020.
  • Coordinated in the visit of SCBC research and postgraduate students to CSIR–Institute of Himalayan Bioresource Technology (CSIR–IHBT) Palampur, Palampur (H.P.) in Feb. 2019.
  • Member (secretary) of School Planning & Policy Committee, SPPC (SCBC, TIET-Patiala) during July 1, 2018–June 30, 2019. I served as a member of SPPC (SCBC, TIET-Patiala) during July 1, 2017–June 30, 2018.
  • Paticipated in the STQC Internal Auditor Training program as per ISO 9001:2015 at TIET Patiala during March 20-22, 2018. I have actively coordinated in the SCBC internal audit during 2018–2019.
  • Actively participated in the set-up of the Applied Chemistry laboratory at the Derabassi campus in April 2018. I was involved in the purchase of lab equipment’s such as Potentiometer, Colorimeter, Conductivity meter, pH meter at TIET Patiala and Derabassi campus.
  • Actively participated in the compilation of the academic and other related data at TIET Patiala (Aug. 2017–till date). I was involved in the compilation of the academic and other related data during NAAC Accreditation-4th Cycle (June 2018), ABET team visit (Nov. 2017), Institute of eminence application process (Nov. 2017) and UGC visit (Aug. 2017) at TIET Patiala.
  • Coordinator, Sponsorships, PARGAAS–Enlightenment, The Youth Festival-2016 held at Sri Guru Granth Sahib World University, Fatehgarh Sahib, Punjab, Nov 3–4, 2016.
  • Centre Superintendent during end-semester final examination at Sri Guru Granth Sahib World University, Fatehgarh Sahib, Punjab during 2015-16, 2016-17. Conducted end-semester final examination of more than 350 students.
  • Teacher Coordinator in the Poster Making Event on “Green Technology” at PARGAAS-ENLIGHTENMENT, The Youth Fest-2014 held at Sri Guru Granth Sahib World University, Fatehgarh Sahib, Punjab, Feb 13, 2014.
  • Executive Secretary in organizing conference on Emerging Horizons in Science & Technology in collaboration with Punjab Academy of Sciences at Sri Guru Granth Sahib World University, Fatehgarh Sahib, Punjab, Jan 17–18, 2014.
  • Departmental level organizer in R&D exhibition at Techfest 2011, IIT Bombay.
  • Department Representative during 200809 in Research Scholar’s Forum, IIT Bombay.
  • Member of organizing team of National level Winter School in Bio-inorganic Chemistry 2007, IIT Bombay.

PERSONAL DETAILS

Nationality: Indian; Date of Birth: Oct 22, 1982; Sex: Male; Languages Known: English, Hindi, and Punjabi; Marital Status: Married

PROFESSIONAL MEMBERSHIPS

Life member of Indian Biophysical Society (IBS), Tata Institute of Fundamental Research, Mumbai, India; Indian Society of Chemists and Biologists (ISCB), CDRI-Lucknow, India; Indian Science Congress Association (ISCA), Kolkata, India; The Society of Biological Chemists India (SBCI), Indian Institute of Science, Bangalore, India; Chemical Research Society of India, Indian Institute of Science, Bangalore, India; Indian Peptide Society, Advanced Scientific Research (JNCASR), Bengaluru, India; Member of American Chemical Society, USA; Bioinformatics and Drug Discovery Society (BIDDS), Alagappa University, Karaikudi, India; Punjab Academy of Sciences, Punjabi University, Patiala, Punjab, India; IIT Bombay Alumini Association, IIT Bombay, Mumbai, India.


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